PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMERI06G08590.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family MIKC_MADS
Protein Properties Length: 223aa    MW: 24844.9 Da    PI: 4.7366
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMERI06G08590.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF80.98.7e-261059251
                     ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
           SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                     rie+   rqvtfskRr g++KKAeEL vLCda+va+++fsstgkl  ++s
  OMERI06G08590.1 10 RIESAAARQVTFSKRRRGLFKKAEELAVLCDADVALVVFSSTGKLSQFAS 59
                     8*********************************************9986 PP

2K-box53.21.3e-18861711698
            K-box  16 slqqelakLkkeienLq...reqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkl 98 
                       l+ e++k  + +e+L     ++R++ Ge+Le Ls++eLqq+e++Le +l+++  +K++ ++++i+elq+k  +l een++Lr ++
  OMERI06G08590.1  86 DLNLEHSKCSSLNEQLAeasLQLRQMRGEELEGLSVEELQQMEKNLEAGLQRVLCTKDQQFMQEISELQRKGIQLAEENMRLRDQM 171
                      45666777777777776555899***********************************************************9885 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004329.9E-35160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006628.104161IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
SuperFamilySSF554553.53E-29374IPR002100Transcription factor, MADS-box
PRINTSPR004048.5E-24323IPR002100Transcription factor, MADS-box
PfamPF003194.4E-251057IPR002100Transcription factor, MADS-box
CDDcd002655.69E-321375No hitNo description
PRINTSPR004048.5E-242338IPR002100Transcription factor, MADS-box
PRINTSPR004048.5E-243859IPR002100Transcription factor, MADS-box
PROSITE profilePS5129713.487177IPR002487Transcription factor, K-box
PfamPF014864.6E-1793171IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 223 aa     Download sequence    Send to blast
MARERREIRR IESAAARQVT FSKRRRGLFK KAEELAVLCD ADVALVVFSS TGKLSQFASS  60
NMNEIIDKYT THSKNLGKTD KQPSIDLNLE HSKCSSLNEQ LAEASLQLRQ MRGEELEGLS  120
VEELQQMEKN LEAGLQRVLC TKDQQFMQEI SELQRKGIQL AEENMRLRDQ MPQVPTAGLA  180
VPDTENVLTE DGQSSESVMT ALNSGSSQDN DDGSDISLKL GLP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1tqe_S5e-19173173Myocyte-specific enhancer factor 2B
1tqe_R5e-19173173Myocyte-specific enhancer factor 2B
1tqe_Q5e-19173173Myocyte-specific enhancer factor 2B
1tqe_P5e-19173173Myocyte-specific enhancer factor 2B
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1118590.0AK111859.1 Oryza sativa Japonica Group cDNA clone:J033024G19, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015641679.11e-162PREDICTED: MADS-box transcription factor 55 isoform X2
SwissprotQ69TG51e-150MAD55_ORYSJ; MADS-box transcription factor 55
TrEMBLA0A0E0DYW81e-162A0A0E0DYW8_9ORYZ; Uncharacterized protein
TrEMBLQ0DDL01e-162Q0DDL0_ORYSJ; Os06g0217300 protein
STRINGLOC_Os06g11330.11e-162(Oryza sativa Japonica Group)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP12213697
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G22540.14e-45MIKC_MADS family protein